Genos SDK

Installation:

  • Installation

Tutorials:

  • Biological Sequence Embedding Extraction Tutorial
    • What is Embedding?
    • Why Extract Embedding?
      • Import Libraries
      • Create Client
    • Basic Usage
    • Model Parameters
      • Available Models
      • Pooling Methods
      • Applications of Embeddings
    • Summary
      • Core Concepts
      • Technical Process
      • Practical Value
      • Next Examples
  • Variant Pathogenicity Prediction
    • Return Result Description
  • RNA Coverage Track Prediction
    • What is “RNA Coverage Track”?
    • What are the key differences from “Expression Prediction”?
    • Return Result Description

API Reference:

  • API Reference
    • genos.client
      • GenosClient
        • GenosClient.variant_predict()
        • GenosClient.get_embedding()
        • GenosClient.rna_coverage_track_pred()
    • genos.api
      • HealthAPI
        • HealthAPI.check()
      • VariantPredictorAPI
        • VariantPredictorAPI.predict()
      • EmbeddingExtractorAPI
        • EmbeddingExtractorAPI.extract()
      • RNASeqCoverageTrackPredictionAPI
        • RNASeqCoverageTrackPredictionAPI.predict()
      • genos.api.embedding_extractor
        • EmbeddingExtractorAPI
      • genos.api.health
        • BaseAPI
        • HealthAPI
      • genos.api.rna_seq_coverage_track_prediction
        • check_chromosome()
        • get_start_position_range()
        • check_valid_parameters()
        • RNASeqCoverageTrackPredictionAPI
      • genos.api.variant_predictor
        • check_chromosome()
        • check_position()
        • VariantPredictorAPI
    • Base Classes
      • genos.api.health.BaseAPI
        • BaseAPI

Release:

  • Release Notes
    • Version: v0.1.1
      • New Features
      • Improvements
      • Documentation

References:

  • References
    • Primary Paper
    • Related Works
    • How to Cite
    • Acknowledgements
Genos SDK
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